FRESCO: Open Source Data Repository for Computational Usage and Failures
06 Mar 2018 | Contributor(s): Saurabh Bagchi, Rakesh Kumar, Rajesh Kalyanam, Stephen Harrell, Carolyn A Ellis, Carol Song
FRESCO is a repository of performance data for scientific code execution jobs submitted to Purdue University's central computing cluster called Conte during March 2015 through June 2017. Data in the repository can be used to identify failed jobs and analyze reasons for failure by...
14 Mar 2017 | Tools | Contributor(s): Erich Huebner
Workspace using the Openbox window manager
Modifying BLASTer to Help Make Observing Protein and Nucleotide Sequences Easier
29 Jul 2016 | Downloads | Contributor(s): Paul Thomas Steele
This poster by student employee Paul Steele documents his work during the summer of 2016 as a participant in the Discovery Park Undergraduate Research Internship (DURI) program. Paul was tasked over a ten week period to overhaul how BLASTer handles output files and to improve the...
19 Feb 2016 | Tools | Contributor(s): Christopher Thompson, Carol Song, Lan Zhao
The popular Scilab open source software for numerical computation.
Demo Analytic Tool for FRESCO data repository
11 Nov 2015 | Tools | Contributor(s): Christopher Thompson, Saurabh Bagchi
A proof-of-concept tool for accessing CRI open failure data inside a tool session.
FRESCO (initial data set)
11 Nov 2015 | Downloads | Contributor(s): Saurabh Bagchi, Suhas Raveesh Javagal, Subrata Mitra, Stephen Harrell, Charles Schwarz
The Fresco open failure data repository for computer site and machine failures for large scale clusters is an effort from the Dependable Computing Systems Laboratory (DCSL) research group of Purdue University with the support of NSF (grants CNS-1405906, CNS-1513197). This initial data...
SC 15 submission that was rejected
21 Oct 2015 | Publications | Contributor(s): Saurabh Bagchi, Subrata Mitra, Suhas Raveesh Javagal, Stephen Harrell, Xiao Zhu
This is the SC submission that we are building on for our Sigmetrics submission.
Project presentation and discussion at UIUC on Oct 6, 2015
20 Oct 2015 | Seminars | Contributor(s): Saurabh Bagchi, Saurabh Bagchi, Suhas Raveesh Javagal, Subrata Mitra
This has material for our project goals, initial steps (including the initial release of the data repository with Purdue Conte cluster data), and discussion about next steps.
Using the HUBzero Platform to Enable Remote Computing on DiaGrid
18 Sep 2015 | Seminars | Contributor(s): Christopher Thompson, Rob Campbell, Steven Clark
These slides were presented at the Hubbub 2015 conference in Indianapolis on September 15th, 2015. The presentation shows software design diagrams and code examples from SubmitR and BLASTer (which are both published upon DiaGrid) to demonstrate general concepts and tips...
CPV dataset test using JSPR Tool on Diagrid
14 Jul 2015 | Teaching Materials | Contributor(s): Donghua Chen, Wen Jiang
Cytoplasmic polyhedrosis virus (CPV) data was collected using Leginon on DE-12 camera (4k×3k, 6μm/pixel, operated at 25 fps, Direct Electron, LP, San Diego) installed on a 300kV FEI Titan Krios electron microscope in Z. Hong Zhou’s lab at UCLA. The images were taken with a dose...
The NLACE GUI: Bring Biomechanical Imaging Analysis to XSEDE Resources
17 Apr 2015 | Seminars | Contributor(s): Christopher Thompson, Paul E Barbone, Assad Anshuman Oberai, Lan Zhao, Daniel Thomas Seidl, Constance Liu, Steven Clark
The work to develop the Non-Linear Adjoint Coefficient Estimation (NLACE) GUI was completed with the support of the Extended Collaborative Support Service (ECSS) program within XSEDE. A series of monthly presentations highlights the projects within ECSS, and the NLACE GUI was featured...
19 Dec 2014 | Tools | Contributor(s): Daniel Thomas Seidl, Assad Anshuman Oberai, Constance Liu, Paul E Barbone, Lan Zhao, Christopher Thompson
Solves an inverse elasticity problem for the shear modulus given displacement data.
Interactive Parallelization Tool (IPT)
06 Jan 2015 | Tools | Contributor(s): Ritu Arora, Feng Chen, Steven Clark, Madhav Kumar Gupta
A High-Level Tool for Parallelizing Legacy C/C++ Applications
29 Jan 2015 | Tools
ParaView is an open-source application for scientific visualization of VTK files.
02 Oct 2014 | Tools
RStudio is a GUI for R, the statistical programming language.
Sample R Scripts for Text Mining Example 1 (Complete Works of Shakespeare)
29 Sep 2014 | Downloads | Contributor(s): Kimberley A Dillman
This is the zip file that contains the data file (Complete Works of William Shakespeare) and sample R scripts to generate a word cloud and heat map for Example 1 on using R for text data analysis.
Spyder on DiaGrid
27 Jun 2014 | Tools | Contributor(s): Rob Campbell
A version of Spyder (a Python IDE) that submits HPC jobs to DiaGrid.
Terrestrial Ecosystem Model
10 Dec 2013 | Tools | Contributor(s): Chang Liao, Qianlai Zhuang, Yang Qu
A process-based ecosystem model that describes carbon and nitrogen dynamics of plants and soils for terrestrial ecosystems.
03 Jul 2014 | Tools | Contributor(s): Erich Huebner, Feng Chen
9-mers Database Search
18 Jun 2014 | Tools | Contributor(s): Phillip J Wyss, Ian James Campbell, Feng "Kevin" Chen, Carol Song, Minou Bina
Search a database of 9-mers from human POLII promoters and genomic DNA sequences